Concerning Yoothemes extensions (Widgetkit, themes, ...) or any extension using the WARP framework, you need to use the "Multisites Patches for Yoothemes".
Yoothemes have bugs in the computation of the path that must be fixed.
www.jms2win.com/en/joomla-multisite?page...46&category_id=1
The issues comes from the fact that Yoothemes bypass the Joomla framework and have redevelop their own stuff that is buggy when using symbolic links.
They use the path of the master that does not match the path of the slave site.
Just because the does NOT use the JPATH_ROOT to compute the path on the css, images, javascript, ....