Install and sharing are 2 differents things.
When you are using the JMS Tool menu to install an extension or share the whole content of an extension, this impact the way that the MySQL tables used by this extension are created.
When you install an extension, this make a copy of the MySQL tables.
When you share the content of an extension, you create a Link to the MySQL table.
To know which tables are used by an extension, we have to define them in configuration files that are included in JMS and require that we review the PHP source code of the extension to know if it can be shared or not.
The matrix that you can see reflect the merge of all our extension definition in a more easy human reading form.
This definition is Joomla version specific.
When you have an extension that is not defined for the sharing, you can always send the the installation package by email for a review and a request for the sharing in a specific joomla version. When this is possible to add that in standard, we do it for a next release of JMS.
In case where there are constraints that forbid to define it in standard inside JMS due to potential inconsistencies, sometimes, we propose to create a specific plugin for the customer that will accept the risk of inconsistencies and limitations.
Concerning the background color, this make reference to the Joomla core extension that can not really be uninstalled. As they are part of the core of joomla, we used another color.
Concerning the backup with Akeeba Backup, it does not work because it only perform the backup of a single website and may also have problem to perform the backup of links between different websites.
This is the reason why you can find in our free download the weekly backup shell script that is able to perform the backup of a single website or all websites.
The shell script is designed for WHM/cPanel and assumed that you are using our JMS recommendation concerning the domain/subdomain directory structure.
www.jms2win.com/en/component/docman/doc_...ackup-script-all-dbs