1) Yes JMS 1.3.x is compatible with Joomla 3.0 - See the Joomla logo with version on each product. This give you the list of Joomla version compatibility depending on the product.
2.a) Yes - As you can see we have recently published JMS 1.3.09 that include stuff for Hikashop and Hikamarket. Hikashop and Hikamarket have added new feature that make them "multisite".
See our change history
www.jms2win.com/en/faq/change-history-13x
Now you can create a super-store that see the product of plenty "mini-store" and in each "mini-store", you can setup the category to filter it on ONE specific website.
With Hikamarket multi-vendor, it is also possible to use the JMS Site ID to filter the vendor and make it only available on a specific website.
2.b) Yes and No. No because when you share Hikashop, this also share the users and the sessions. When working with website in different domains, apache (or IIS) does not share the session data. Under Joomla 2.5, the session are NOT shared automatically between subdomains. That mean that you can share the users but the session is not really shared. That mean that the user will have to re-login in the other subdomain or domain to get a new "session" data. As the shopping cart are generally saved in a session they will be automatically specific - except is you setup Joomla to decide sharing the session or use the "Single Sign-In for Doamins" that will result by a sesssion sharing.
2.c) When you share the Hikashop the users are automatically shared.
If you want that the users remain logged when changing of subdomains, you need a specific setup in Joomla 2.5. If you want the same for the domains, you need the "Single Sign-In for domains"
www.jms2win.com/en/joomla-multisite?page...51&category_id=1
When the hikashop is shared the address are identical in all the websites.
All the hikashop content is shared.
3) You can already start with JMS 1.3.09 basic.
Concerning Hikashop and Hikamarket, I suggest that you have a look on their website to see the difference between the starter, essential and business. Personnally, I think that essential is the minimum.
4) If you just need websites into subdomains, JMS 1.3.x is enough to start.
5) In addition of the Hikashop, see also the Hikamarket multi-vendor that may (not necessary your case) help you setup product for one specific vendor that is present in a specific website. With Hikashop, you can define a product that is present in several categories. As you can filter the categories depending on ONE website, you can have products present in a specific website. So that you can have a "super-store" inventory and "mini-store" with specific product.
6) Joomlart should be OK.
We have reported them some issue in the framework and if they have applied the fixes that we have provided to them, they should be OK.
In case of issue, report the issue to Joomlart that have the fixes.
We are also partner with Hikashop and have a close collaboration with their team to develop the extension with Multisites facilities in Hikashop and Hikamarket.
You can also use our partner link to let Hikashop know that you come from us.
www.hikashop.com?partner_id=16361