First you didn't mentioned in your first post if you had use the JMS 1.2.61 or an older JMS version.
Only in your last post you written that you copied the JMS 1.2.61 file.
I suspect that you had used an older JMS version to work with Joomla 1.7.
It is recommended to use JMS 1.2.61 to work with Joomla 1.7
In addition, you mentioned in your first post that you followed and post in the forum.
If you had followed the tutorial video 3 and its description, you would have saw that there is also a procedure to install from a directory when a server has limitation like your server.
The current JMS size is almost 4MB.
Yes there is patches present in the distribution.
It is in the root of the patches directory.
If you didn't see them, this mean that you are using a old JMS version.
Perhaps you would have to check your JMS version and the "change history" to know if your JMS version is compatible with more recent joomla.
www.jms2win.com/en/faq/change-history-v12x
If you upgraded an existing Joomla 1.5 into a Joomla 1.6, it is normal that the "installation" directory is not updated as Joomla do not do it.
You have to remove the "installation" directory and repatch JMS to let him install the "installation" directory for your new Joomla version.
JMS contain the installation directory for Joomla 1.5, 1.6 and 1.7