*) If you replicate the master then yes slave1 CB contain a copy of the master CB
If you create a fresh slave site and re-install CB from the slave1 back-end then NO
If you create a fresh slave site and use the JMS tool to install CB then yes you will copy the master.
*) The symbolic link is done with master to build slave 1.
*) JMS does not perform any synchronization.
Therefore, if there is an upgrade of an extension that modify the tables structure, you have to re-install the extension in the slave site to let the extension perform the upgrade. With JMS 1.3, there is a "maintenance" menu that help identifying the DB structure modification and apply the changes to a set of website.
When an extension perform an update, you just need to do the update on the master.
See the user manual that describe the different scenario and explain the difference between an update and an upgrade.
When you share the content of an extension, you just have to remove the sharing and rebuild it to let MySQL be informed of the upgrade of DB table structure
*) JMS does NOT perform any synchronization.
Therefore, if you copy some directories rather than to use the symbolic links, up to you to perform the synchronization.
**) You can create "layout" in JMS and therefore create your specific look for the question. See for example the
www.mywebsite2win.com that is a portal that propose different kind of websites template.
**) If you want that the slave site are updated when you change something you need to share it (with symbolic link in case of directory).
***) When you share the whole content of a website, you share everything.
You can not say share whole except.
With JMS you can "share whole" or share nothing with explicit sharing of a limited number of extension.
It is true that with JMS you have a lot of possiblities.
If you want that we help you setup your environment, this is possible with our billable support that you can order at
www.jms2win.com/en/joomla-multisite?page...35&category_id=1