If you are using a domain or a sub-domain that have their own directory, then you have to deploy the slave site in this particular directory or you may have a list of files present (without the index.php file).
To know how configure a slave site that also use a JMS template for the replication, maybe the tutorial CP-04 will help you
www.jms2win.com/tutorial#jms12x-CP-04
You can also have a look to the other CP-xx video that perhaps will help you see the relationship between the hosting configuration and the JMS slave site directory.